species:   Scscl
pid:       PID1647
parent:    Ssc-milR-123
paralog:   
locus:     NW_001820826.1:1280326-1280411
matures:   ['UCGAGGGUCAUUCGGGUUCGG', 'GUACAAAAGUAGCUUCGGGC']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820826.1:1280326-1280411

24 out of bounds
22 alignments
7 proper strand
6 stranded perfect matches

     ***********************                               **********************     
CUUCAAACGCUCGAGGGUCAUUCGGGUUCGGUUUGGUCAGUUGCCUUCUCACCAGAUGGUACAAAAGUAGCUUCGGGCUCUUACGA
........((((((((.(.(((...((.(.(((((((.((.......)).))))))).).))...)))).))))))))........
----------UCGAGGGUCAUUCGGGUUCGG------------------------------------------------------- l=21 a=0 c
----------------------------------------------------------GUACAAAAGUAGCUUCGGGC-------- l=20 a=0 c*
-------CGCUCGAGGGUCAUUCGGGUU---------------------------------------------------------- l=21 a=1 ma
-------------------------------------------------------------CAAAAGUAGCUUCGGGCUCU----- l=20 a=0 ma*

-------CGCUCGAGGGUCAUUCGGGUU---------------------------------------------------------- l=21 a=1 (ma)
------------GAGGGUCAUUCGGGUUCGGUUUa--------------------------------------------------- l=23 a=1 
--------------GGGUCAUUCGGGUUCGGUU----------------------------------------------------- l=19 a=1 
---------------------UCGGGUUCGGUUUGGUCAGUUGC------------------------------------------ l=23 a=1 
---------------------------UCGGUUUGGUCAGUUGCCUUCU------------------------------------- l=22 a=1 
-----------------------------------------------------------UACAAAAGUAGCUUCGGG--------- l=18 a=1 
------------------------------------------------------------ACAAAAGUAGCUUCGGGCUCUUA--- l=23 a=1 

mb-01011
ax-1001011
ku-01
ss-110110001100
fn-001
